Genomic characteristics of Russian patients with non-small cell lung cancer: Results of next-generation sequencing testing
https://doi.org/10.21518/ms2024-541
Abstract
Introduction. Next-generation sequencing (NGS) is a molecular approach that can provide clinicians with comprehensive information about a patient’s molecular profile, which is an important aspect of the effective application of targeted therapy.
Aim. To assess the frequency of tumor somatic mutations in non-small cell lung cancer (NSCLC) in a cohort of Russian patients to subsequently optimize diagnostics and personalize treatment strategies.
Materials and methods. The study included the results of NGS testing from a cohort of 1.400 NSCLC patients between March 17, 2023, and July 22, 2024. Several other clinics across the country participated in this multicenter study. Panels with various options for identifying potential genetic alterations were used. An analysis of the frequency of various alterations was conducted based on the panel used, clinical characteristics of the patients, considering the geographical and ethnographic diversity of the regions in the country.
Results. Mutations were most frequently found in the KRAS (17.9%) and EGFR (15.8%) genes, particularly among never-smoker women. The frequency of rare mutations such as RET, MET, and NTRK corresponds to literature data and underscores the need to expand the group of patients being tested for these alterations. However, deletions in exon 19 of EGFR (12.7%) and KRAS G12C (16.4%) were also found among smokers. The results highlight the inadequate scope of existing testing, partly due to the lack of co-mutation assessment and primary resistance mutations, while also demonstrating possible differences when using various diagnostic panels.
Conclusion. The implementation of NGS in public health systems allows for a more personalized approach to selecting treatment strategies for patients. The data obtained can be used in predictive models to optimize drug distribution.
About the Authors
K. K. LaktionovRussian Federation
Konstantin K. Laktionov, Dr. Sci. (Med.), Professor of the Department of Oncology and Radiation Therapy of the Faculty of Medicine; Head of the Oncological Department of Medical Treatment Methods (Chemotherapeutic) No. 17
1, Ostrovityanov St., Moscow, 117997
24, Kashirskoye Shosse, Moscow, 115478
M. G. Gordiev
Russian Federation
Marat G. Gordiev, Laboratory Geneticist (Physician)
49, Bldg. 1, Orekhovy Boulevard, Moscow, 115580
K. A. Sarantseva
Russian Federation
Ksenia A. Sarantseva, Cand. Sci. (Med.), Oncologist, Researcher of Chemotherapy Department No. 3; Assistant Professor, Department of Oncology and Radiation Therapy, Faculty of Medicine
24, Kashirskoye Shosse, Moscow, 115478
1, Ostrovityanov St., Moscow, 117997
I. A. Demidova
Russian Federation
Irina A. Demidova, Cand. Sci. (Med.), Laboratory Geneticist (Physician), Head of the Laboratory of Molecular Biology
27, Village Istra, Krasnogorsk, Moscow Region, 143515
A. M. Stroganova
Russian Federation
Anna M. Stroganova, Cand. Sci. (Med.), Head of the Laboratory of Molecular Genetic Diagnostics (Consultation and Diagnostic Center)
24, Kashirskoye Shosse, Moscow, 115478
M. L. Filipenko
Russian Federation
Maхim L. Filipenko, Cand. Sci. (Biol.), Chief Researcher, Head of the Pharmacogenomics Laboratory
8, Lavrentiev Ave., Novosibirsk, 630090
Yu. G. Zhusina
Russian Federation
Yulia G. Zhusina, Geneticist, Head of the Oncogenetics Department
28, Donskaya St., Moscow, 115419
V. V. Karaseva
Russian Federation
Vera V. Karaseva, Cand. Sci. (Med.), Professor, Executive Director
25, Bldg. 1, Trubnaya St., Moscow, 127051
E. B. Kutirina
Russian Federation
Elena B. Kutyrina, Executive Director
17, Bldg. 1, Dolgorukovskaya St., Moscow, 127006
A. M. Kazakov
Russian Federation
Aleksey M. Kazakov, Oncologist of the Department of Antitumor Drug Therapy No. 3, Department of Drug Treatment Methods
24, Kashirskoye Shosse, Moscow, 115478
M. V. Soloveva
Russian Federation
Mariia V. Soloveva, Resident
24, Kashirskoye Shosse, Moscow, 115478
References
1. Mosele MF, Westphalen CB, Stenzinger A, Barlesi F, Bayle A, Bièche I et al. Recommendations for the use of next-generation sequencing (NGS) for patients with advanced cancer in 2024: a report from the ESMO Precision Medicine Working Group. Ann Oncol. 2024;35(7):588-606. https://doi.org/10.1016/j.annonc.2024.04.005.
2. van de Haar J, Roepman P, Andre F, Balmaña J, Castro E, Chakravarty D et al. ESMO Recommendations on clinical reporting of genomic test results for solid cancers. Ann Oncol. 2024;35(11):954-967. https://doi.org/10.1016/j.annonc.2024.06.018.
3. Penault-Llorca F, Kerr KM, Garrido P, Thunnissen E, Dequeker E, Normanno N et al. Expert Opinion on NSCLC Small Specimen Biomarker Testing-Part 2: Analysis, Reporting, and Quality Assessment. Virchows Arch. 2022;481:351-366. https://doi.org/10.1007/s00428-022-03344-1.
4. Хатьков ИЕ, Жукова ЛГ, Данишевич АМ, Бодунова НА, Воронцова МВ, Макарова МВ и др. Рекомендации по медицинскому сопровождению пациентов с верифицированными (подтвержденными) наследственными опухолевыми синдромами и их родственников с выявленной предрасположенностью к развитию онкологических заболеваний. М.: ООО «Эвоген», ГБУЗ «МКНЦ им. А.С. Логинова ДЗМ»; 2022. 27 с. Режим доступа: https://mosgenetics.ru/рекомендации-по-медицинскому-сопров-2/.
5. Laktionov KK, Artamonova EV, Breder VV, Gorbunova VA, Demidova IA, Dengina NV et al. Non-small cell lung cancer. Malignant Tumors. 2023;13(3s2):42-65. (In Russ.) https://doi.org/10.18027/2224-5057-2023-13-3s2-1-42-65.
6. Лактионов КК, Артамонова ЕВ, Бредер ВВ, Борисова ТН, Бычков МБ, Владимирова ЛЮ и др. Злокачественное новообразование бронхов и легкого: клинические рекомендации. 2021. Режим доступа: https://cr.minzdrav.gov.ru/recomend/30_3.
7. Pisapia P, Pepe F, Baggi A, Barberis M, Galvano A, Gristina V et al. Next generation diagnostic algorithm in non-small cell lung cancer predictive molecular pathology: The KWAY Italian multicenter cost evaluation study. Crit Rev Oncol Hematol. 2022;169:103525. https://doi.org/10.1016/j.critrevonc.2021.103525.
8. Chakravarty D, Johnson A, Sklar J, Lindeman NI, Moore K, Ganesan S et al. Somatic Genomic Testing in Patients With Metastatic or Advanced Cancer: ASCO Provisional Clinical Opinion. J Clin Oncol. 2022;40(11):1231-1258. https://doi.org/10.1200/jco.21.02767.
9. Ettinger DS, Wood DE, Aisner DL, Akerley W, Bauman JR, Bharat A et al. NCCN Guidelines® Insights: Non-Small Cell Lung Cancer, Version 2.2023. J Natl Compr Canc Netw. 2023;21(4):340-350. https://doi.org/10.6004/jnccn.2023.0020.
10. Riely GJ, Wood DE, Ettinger DS, Aisner DL, Akerley W, Bauman JR et al. NonSmall Cell Lung Cancer, Version 4.2024, NCCN Clinical Practice Guidelines in Oncology. J Natl Compr Canc Netw. 2024;22(4):249-274. https://doi.org/10.6004/jnccn.2204.0023.
11. Lindeman NI, Cagle PT, Aisner DL, Arcila ME, Beasley MB, Bernicker EH et al. Updated Molecular Testing Guideline for the Selection of Lung Cancer Patients for Treatment With Targeted Tyrosine Kinase Inhibitors: Guideline From the College of American Pathologists, the International Association for the Study of Lung Cancer, and the Association for Molecular Pathology. J Thorac Oncol. 2018;13(3):323-358. https://doi.org/10.1016/j.jtho.2017.12.001.
12. Hendriks LE, Kerr KM, Menis J, Mok TS, Nestle U, Passaro A et al. Oncogeneaddicted metastatic non-small-cell lung cancer: ESMO Clinical Practice Guideline for diagnosis, treatment and follow-up. Ann Oncol. 2023;34(4):339-357. https://doi.org/10.1016/j.annonc.2022.12.009.
13. Remon J, Soria JC, Peters S. Early and locally advanced non-small-cell lung cancer: an update of the ESMO Clinical Practice Guidelines focusing on diagnosis, staging, systemic and local therapy. Ann Oncol. 2021;32(12):1637-1642. https://doi.org/10.1016/j.annonc.2021.08.1994.
14. Mateo J, Chakravarty D, Dienstmann R, Jezdic S, Gonzalez-Perez A, Lopez-Bigas N et al. A framework to rank genomic alterations as targets for cancer precision medicine: the ESMO Scale for Clinical Actionability of molecular Targets (ESCAT). Ann Oncol. 2018;29(9):1895-1902. https://doi.org/10.1093/annonc/mdy263.
15. Herbst RS, Wu YL, John T, Grohe C, Majem M, Wang J et al. Adjuvant Osimertinib for Resected EGFR-Mutated Stage IB-IIIA Non-Small-Cell Lung Cancer: Updated Results From the Phase III Randomized ADAURA Trial. J Clin Oncol. 2023;41(10):1830-1840. https://doi.org/10.1200/jco.22.02186.
16. Jabbour SK, Lee KH, Frost N, Breder V, Kowalski DM, Pollock T et al. embrolizumab Plus Concurrent Chemoradiation Therapy in Patients With Unresectable, Locally Advanced, Stage III Non-Small Cell Lung Cancer: The Phase 2 KEYNOTE-799 Nonrandomized Trial. JAMA Oncol. 2021;7(9):1-9. https://doi.org/10.1001/jamaoncol.2021.2301.
17. Iyer RS, Needham SR, Galdadas I, Davis BM, Roberts SK, Man RCH et al. Drug-resistant EGFR mutations promote lung cancer by stabilizing interfaces in ligand-free kinase-active EGFR oligomers. Nat Commun. 2024;15(1):2130. https://doi.org/10.1038/s41467-024-46284-x.
18. Goulding RE, Chenoweth M, Carter GC, Boye ME, Sheffield KM, John WJ et al. KRAS mutation as a prognostic factor and predictive factor in advanced/metastatic non-small cell lung cancer: A systematic literature review and meta-analysis. Cancer Treat Res Commun. 2020;24:100200. https://doi.org/10.1016/j.ctarc.2020.100200.
19. Liang Y, Maeda O, Kondo C, Nishida K, Ando Y. Effects of KRAS, STK11, KEAP1, and TP53 mutations on the clinical outcomes of immune checkpoint inhibitors among patients with lung adenocarcinoma. PLoS ONE. 2024;19(7):e0307580. https://doi.org/10.1371/journal.pone.0307580.
20. Seminati D, L’Imperio V, Casati G, Ceku J, Pilla D, Scalia CR et al. Economic assessment of NGS testing workflow for NSCLC in a healthcare setting. Heliyon. 2024;10(7):e29272. https://doi.org/10.1016/j.heliyon.2024.e29272.
21. Provencio M, Carcereny E, Rodríguez-Abreu D, López-Castro R, Guirado M, Camps C et al. Lung cancer in Spain: information from the Thoracic Tumors Registry (TTR study). Transl Lung Cancer Res. 2019;8(4):461-475. https://doi.org/10.21037/tlcr.2019.08.05.
22. Barlesi F, Mazieres J, Merlio JP, Debieuvre D, Mosser J, Lena H et al. Routine molecular profiling of patients with advanced non-small-cell lung cancer: results of a 1-year nationwide programme of the French Cooperative Thoracic Intergroup (IFCT). Lancet. 2016;387(10026):1415-1426. https://doi.org/10.1016/s0140-6736(16)00004-0.
23. Tsoulos N, Papadopoulou E, Metaxa-Mariatou V, Tsaousis G, Efstathiadou C, Tounta G et al. Tumor molecular profiling of NSCLC patients using next generation sequencing. Oncol Rep. 2017;38(6):3419-3429. https://doi.org/10.3892/or.2017.6051.
24. Simarro J, Pérez-Simó G, Mancheño N, Ansotegui E, Muñoz-Núñez CF, Gómez-Codina J et al. Impact of Molecular Testing Using Next-Generation Sequencing in the Clinical Management of Patients with Non-Small Cell Lung Cancer in a Public Healthcare Hospital. Cancers. 2023;15(6):1705. https://doi.org/10.3390/cancers15061705.
25. Zhang YL, Yuan JQ, Wang KF, Fu XH, Han XR, Threapleton D et al. The prevalence of EGFR mutation in patients with non-small cell lung cancer: a systematic review and meta-analysis. Oncotarget. 2016;7(48):78985-78993. https://doi.org/10.18632/oncotarget.12587.
26. Fan L, Feng Y, Wan H, Shi G, Niu W. Clinicopathological and Demographical Characteristics of Non-Small Cell Lung Cancer Patients with ALK Rearrangements: A Systematic Review and Meta-Analysis. PLoS ONE. 2014;9:e100866. https://doi.org/10.1371/journal.pone.0100866.
27. Vasudevan S, Krishna V, Mehta A. Lung Cancer in Non-Smokers: Clinicopathological and Survival Differences from Smokers. Cureus. 2022;14(12):e32417. https://doi.org/10.7759/cureus.32417.
28. Lim SM, Kim EY, Kim HR, Ali SM, Greenbowe JR, Shim HS et al. Genomic profiling of lung adenocarcinoma patients reveals therapeutic targets and confers clinical benefit when standard molecular testing is negative. Oncotarget. 2016;7(17):24172-24178. https://doi.org/10.18632/oncotarget.8138.
29. Wang Y, Liu H, Yu N, Xiang X. Concordance of Abundance for Mutational EGFR and Co-Mutational TP53 with Efficacy of EGFR-TKI Treatment in Metastatic Patients with Non-Small-Cell Lung Cancer. Curr Oncol. 2023;30(9):8464-8476. https://doi.org/10.3390/curroncol30090616.
30. Tu T, Chen D, Jiang H, Ma J, Wang H, Chen C. The Prognosis of Advanced NonSmall Cell Lung Cancer Patients with Precision-Targeted Therapy Guided by NGS Testing or Routine Testing. Cancer Manag Res. 2023;15:1307-1318. https://doi.org/10.2147/cmar.s436808.
Review
For citations:
Laktionov KK, Gordiev MG, Sarantseva KA, Demidova IA, Stroganova AM, Filipenko ML, Zhusina YG, Karaseva VV, Kutirina EB, Kazakov AM, Soloveva MV. Genomic characteristics of Russian patients with non-small cell lung cancer: Results of next-generation sequencing testing. Meditsinskiy sovet = Medical Council. 2024;(21):104-112. (In Russ.) https://doi.org/10.21518/ms2024-541